PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G278100.1.p
Common NameGLYMA_09G278100, LOC100527466
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 153aa    MW: 16760.1 Da    PI: 4.4785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G278100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.000117441154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         +RR+ + + +++Lr++  +      + l+Ka+i   A +YI +L
  Glyma.09G278100.1.p  7 KRRASLEETLQQLRDVTNS------TALNKASIIVDASKYIEEL 44
                         6899999999999998665......46**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.6E-7757IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-7759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.55183152IPR002912ACT domain
CDDcd048733.36E-492148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MAASREKRRA SLEETLQQLR DVTNSTALNK ASIIVDASKY IEELKQKVEG LNSELEIAES  60
STTTQIDELP MVIVKTLKKG FLINVLLEKN CPGMLVSILE AFEELGLDVL DARVSCEDSF  120
QLEAVGRESH KNDSVDAQVV KQAVLQAIKN AD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.386670.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0923090.0BT092309.1 Soybean clone JCVI-FLGm-10J13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236453.11e-106uncharacterized protein LOC100527466
TrEMBLA0A0B2RCD51e-105A0A0B2RCD5_GLYSO; Uncharacterized protein
TrEMBLC6T4E81e-105C6T4E8_SOYBN; Uncharacterized protein
STRINGGLYMA09G41470.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF7241015
Representative plantOGRP190735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-06bHLH family protein